mpi4py 설치 에러 해결하기

2021. 3. 28. 22:48꿀팁 분석 환경 설정/Linux 관련 팁

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OS : ubuntu16.04

RROR: Command errored out with exit status 1:
   command: /opt/conda/envs/rl/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-4q1x2alw/mpi4py_d44b5798f89d40429ac785557052b8ca/setup.py'"'"'; __file__='"'"'/tmp/pip-install-4q1x2alw/mpi4py_d44b5798f89d40429ac785557052b8ca/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ijlqd3lf
       cwd: /tmp/pip-install-4q1x2alw/mpi4py_d44b5798f89d40429ac785557052b8ca/
  Complete output (126 lines):
  running bdist_wheel
  running build
  running build_src
  running build_py
  creating build
  creating build/lib.linux-x86_64-3.7
  creating build/lib.linux-x86_64-3.7/mpi4py
  copying src/mpi4py/__main__.py -> build/lib.linux-x86_64-3.7/mpi4py
  copying src/mpi4py/__init__.py -> build/lib.linux-x86_64-3.7/mpi4py
  copying src/mpi4py/run.py -> build/lib.linux-x86_64-3.7/mpi4py
  copying src/mpi4py/bench.py -> build/lib.linux-x86_64-3.7/mpi4py
  creating build/lib.linux-x86_64-3.7/mpi4py/futures
  copying src/mpi4py/futures/__main__.py -> build/lib.linux-x86_64-3.7/mpi4py/futures
  copying src/mpi4py/futures/aplus.py -> build/lib.linux-x86_64-3.7/mpi4py/futures
  copying src/mpi4py/futures/server.py -> build/lib.linux-x86_64-3.7/mpi4py/futures
  copying src/mpi4py/futures/_base.py -> build/lib.linux-x86_64-3.7/mpi4py/futures
  copying src/mpi4py/futures/__init__.py -> build/lib.linux-x86_64-3.7/mpi4py/futures
  copying src/mpi4py/futures/_lib.py -> build/lib.linux-x86_64-3.7/mpi4py/futures
  copying src/mpi4py/futures/pool.py -> build/lib.linux-x86_64-3.7/mpi4py/futures
  copying src/mpi4py/libmpi.pxd -> build/lib.linux-x86_64-3.7/mpi4py
  copying src/mpi4py/MPI.pxd -> build/lib.linux-x86_64-3.7/mpi4py
  copying src/mpi4py/__init__.pxd -> build/lib.linux-x86_64-3.7/mpi4py
  creating build/lib.linux-x86_64-3.7/mpi4py/include
  creating build/lib.linux-x86_64-3.7/mpi4py/include/mpi4py
  copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-x86_64-3.7/mpi4py/include/mpi4py
  copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-x86_64-3.7/mpi4py/include/mpi4py
  copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-x86_64-3.7/mpi4py/include/mpi4py
  copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-x86_64-3.7/mpi4py/include/mpi4py
  copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-x86_64-3.7/mpi4py/include/mpi4py
  running build_clib
  MPI configuration: [mpi] from 'mpi.cfg'
  checking for library 'lmpe' ...
  gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
  gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ _configtest.o -llmpe -o _configtest
  /opt/conda/envs/rl/compiler_compat/ld: cannot find -llmpe
  collect2: error: ld returned 1 exit status
  failure.
  removing: _configtest.c _configtest.o
  building 'mpe' dylib library
  creating build/temp.linux-x86_64-3.7
  creating build/temp.linux-x86_64-3.7/src
  creating build/temp.linux-x86_64-3.7/src/lib-pmpi
  gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-x86_64-3.7/src/lib-pmpi/mpe.o
  creating build/lib.linux-x86_64-3.7/mpi4py/lib-pmpi
  gcc -pthread -shared -B /opt/conda/envs/rl/compiler_compat -L/opt/conda/envs/rl/lib -Wl,-rpath=/opt/conda/envs/rl/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.7/src/lib-pmpi/mpe.o -o build/lib.linux-x86_64-3.7/mpi4py/lib-pmpi/libmpe.so
  checking for library 'vt-mpi' ...
  gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
  gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt-mpi -o _configtest
  /opt/conda/envs/rl/compiler_compat/ld: cannot find -lvt-mpi
  collect2: error: ld returned 1 exit status
  failure.
  removing: _configtest.c _configtest.o
  checking for library 'vt.mpi' ...
  gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
  gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt.mpi -o _configtest
  /opt/conda/envs/rl/compiler_compat/ld: cannot find -lvt.mpi
  collect2: error: ld returned 1 exit status
  failure.
  removing: _configtest.c _configtest.o
  building 'vt' dylib library
  gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-x86_64-3.7/src/lib-pmpi/vt.o
  gcc -pthread -shared -B /opt/conda/envs/rl/compiler_compat -L/opt/conda/envs/rl/lib -Wl,-rpath=/opt/conda/envs/rl/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.7/src/lib-pmpi/vt.o -o build/lib.linux-x86_64-3.7/mpi4py/lib-pmpi/libvt.so
  checking for library 'vt-mpi' ...
  gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
  gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt-mpi -o _configtest
  /opt/conda/envs/rl/compiler_compat/ld: cannot find -lvt-mpi
  collect2: error: ld returned 1 exit status
  failure.
  removing: _configtest.c _configtest.o
  checking for library 'vt.mpi' ...
  gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
  gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt.mpi -o _configtest
  /opt/conda/envs/rl/compiler_compat/ld: cannot find -lvt.mpi
  collect2: error: ld returned 1 exit status
  failure.
  removing: _configtest.c _configtest.o
  building 'vt-mpi' dylib library
  gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-x86_64-3.7/src/lib-pmpi/vt-mpi.o
  gcc -pthread -shared -B /opt/conda/envs/rl/compiler_compat -L/opt/conda/envs/rl/lib -Wl,-rpath=/opt/conda/envs/rl/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.7/src/lib-pmpi/vt-mpi.o -o build/lib.linux-x86_64-3.7/mpi4py/lib-pmpi/libvt-mpi.so
  checking for library 'vt-hyb' ...
  gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
  gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt-hyb -o _configtest
  /opt/conda/envs/rl/compiler_compat/ld: cannot find -lvt-hyb
  collect2: error: ld returned 1 exit status
  failure.
  removing: _configtest.c _configtest.o
  checking for library 'vt.ompi' ...
  gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
  gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt.ompi -o _configtest
  /opt/conda/envs/rl/compiler_compat/ld: cannot find -lvt.ompi
  collect2: error: ld returned 1 exit status
  failure.
  removing: _configtest.c _configtest.o
  building 'vt-hyb' dylib library
  gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-x86_64-3.7/src/lib-pmpi/vt-hyb.o
  gcc -pthread -shared -B /opt/conda/envs/rl/compiler_compat -L/opt/conda/envs/rl/lib -Wl,-rpath=/opt/conda/envs/rl/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.7/src/lib-pmpi/vt-hyb.o -o build/lib.linux-x86_64-3.7/mpi4py/lib-pmpi/libvt-hyb.so
  running build_ext
  MPI configuration: [mpi] from 'mpi.cfg'
  checking for dlopen() availability ...
  checking for header 'dlfcn.h' ...
  gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/rl/include/python3.7m -c _configtest.c -o _configtest.o
  success!
  removing: _configtest.c _configtest.o
  success!
  checking for library 'dl' ...
  gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/rl/include/python3.7m -c _configtest.c -o _configtest.o
  gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-x86_64-3.7 -ldl -o _configtest
  success!
  removing: _configtest.c _configtest.o _configtest
  checking for function 'dlopen' ...
  gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/rl/include/python3.7m -c _configtest.c -o _configtest.o
  gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-x86_64-3.7 -ldl -o _configtest
  success!
  removing: _configtest.c _configtest.o _configtest
  building 'mpi4py.dl' extension
  gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/opt/conda/envs/rl/include/python3.7m -c src/dynload.c -o build/temp.linux-x86_64-3.7/src/dynload.o
  gcc -pthread -shared -B /opt/conda/envs/rl/compiler_compat -L/opt/conda/envs/rl/lib -Wl,-rpath=/opt/conda/envs/rl/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.7/src/dynload.o -Lbuild/temp.linux-x86_64-3.7 -ldl -o build/lib.linux-x86_64-3.7/mpi4py/dl.cpython-37m-x86_64-linux-gnu.so
  checking for MPI compile and link ...
  gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/rl/include/python3.7m -c _configtest.c -o _configtest.o
  _configtest.c:2:10: fatal error: mpi.h: No such file or directory
   #include <mpi.h>
            ^~~~~~~
  compilation terminated.
  failure.
  removing: _configtest.c _configtest.o
  error: Cannot compile MPI programs. Check your configuration!!!
  ----------------------------------------
  ERROR: Failed building wheel for mpi4py
  Running setup.py clean for mpi4py
Failed to build mpi4py
Installing collected packages: mpi4py
    Running setup.py install for mpi4py ... error
    ERROR: Command errored out with exit status 1:
     command: /opt/conda/envs/rl/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-4q1x2alw/mpi4py_d44b5798f89d40429ac785557052b8ca/setup.py'"'"'; __file__='"'"'/tmp/pip-install-4q1x2alw/mpi4py_d44b5798f89d40429ac785557052b8ca/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-rdn4loj_/install-record.txt --single-version-externally-managed --user --prefix= --compile --install-headers /home/bakingsoda/.local/include/python3.7m/mpi4py
         cwd: /tmp/pip-install-4q1x2alw/mpi4py_d44b5798f89d40429ac785557052b8ca/
    Complete output (126 lines):
    running install
    running build
    running build_src
    running build_py
    creating build
    creating build/lib.linux-x86_64-3.7
    creating build/lib.linux-x86_64-3.7/mpi4py
    copying src/mpi4py/__main__.py -> build/lib.linux-x86_64-3.7/mpi4py
    copying src/mpi4py/__init__.py -> build/lib.linux-x86_64-3.7/mpi4py
    copying src/mpi4py/run.py -> build/lib.linux-x86_64-3.7/mpi4py
    copying src/mpi4py/bench.py -> build/lib.linux-x86_64-3.7/mpi4py
    creating build/lib.linux-x86_64-3.7/mpi4py/futures
    copying src/mpi4py/futures/__main__.py -> build/lib.linux-x86_64-3.7/mpi4py/futures
    copying src/mpi4py/futures/aplus.py -> build/lib.linux-x86_64-3.7/mpi4py/futures
    copying src/mpi4py/futures/server.py -> build/lib.linux-x86_64-3.7/mpi4py/futures
    copying src/mpi4py/futures/_base.py -> build/lib.linux-x86_64-3.7/mpi4py/futures
    copying src/mpi4py/futures/__init__.py -> build/lib.linux-x86_64-3.7/mpi4py/futures
    copying src/mpi4py/futures/_lib.py -> build/lib.linux-x86_64-3.7/mpi4py/futures
    copying src/mpi4py/futures/pool.py -> build/lib.linux-x86_64-3.7/mpi4py/futures
    copying src/mpi4py/libmpi.pxd -> build/lib.linux-x86_64-3.7/mpi4py
    copying src/mpi4py/MPI.pxd -> build/lib.linux-x86_64-3.7/mpi4py
    copying src/mpi4py/__init__.pxd -> build/lib.linux-x86_64-3.7/mpi4py
    creating build/lib.linux-x86_64-3.7/mpi4py/include
    creating build/lib.linux-x86_64-3.7/mpi4py/include/mpi4py
    copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-x86_64-3.7/mpi4py/include/mpi4py
    copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.linux-x86_64-3.7/mpi4py/include/mpi4py
    copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-x86_64-3.7/mpi4py/include/mpi4py
    copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.linux-x86_64-3.7/mpi4py/include/mpi4py
    copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.linux-x86_64-3.7/mpi4py/include/mpi4py
    running build_clib
    MPI configuration: [mpi] from 'mpi.cfg'
    checking for library 'lmpe' ...
    gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
    gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ _configtest.o -llmpe -o _configtest
    /opt/conda/envs/rl/compiler_compat/ld: cannot find -llmpe
    collect2: error: ld returned 1 exit status
    failure.
    removing: _configtest.c _configtest.o
    building 'mpe' dylib library
    creating build/temp.linux-x86_64-3.7
    creating build/temp.linux-x86_64-3.7/src
    creating build/temp.linux-x86_64-3.7/src/lib-pmpi
    gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-x86_64-3.7/src/lib-pmpi/mpe.o
    creating build/lib.linux-x86_64-3.7/mpi4py/lib-pmpi
    gcc -pthread -shared -B /opt/conda/envs/rl/compiler_compat -L/opt/conda/envs/rl/lib -Wl,-rpath=/opt/conda/envs/rl/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.7/src/lib-pmpi/mpe.o -o build/lib.linux-x86_64-3.7/mpi4py/lib-pmpi/libmpe.so
    checking for library 'vt-mpi' ...
    gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
    gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt-mpi -o _configtest
    /opt/conda/envs/rl/compiler_compat/ld: cannot find -lvt-mpi
    collect2: error: ld returned 1 exit status
    failure.
    removing: _configtest.c _configtest.o
    checking for library 'vt.mpi' ...
    gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
    gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt.mpi -o _configtest
    /opt/conda/envs/rl/compiler_compat/ld: cannot find -lvt.mpi
    collect2: error: ld returned 1 exit status
    failure.
    removing: _configtest.c _configtest.o
    building 'vt' dylib library
    gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-x86_64-3.7/src/lib-pmpi/vt.o
    gcc -pthread -shared -B /opt/conda/envs/rl/compiler_compat -L/opt/conda/envs/rl/lib -Wl,-rpath=/opt/conda/envs/rl/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.7/src/lib-pmpi/vt.o -o build/lib.linux-x86_64-3.7/mpi4py/lib-pmpi/libvt.so
    checking for library 'vt-mpi' ...
    gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
    gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt-mpi -o _configtest
    /opt/conda/envs/rl/compiler_compat/ld: cannot find -lvt-mpi
    collect2: error: ld returned 1 exit status
    failure.
    removing: _configtest.c _configtest.o
    checking for library 'vt.mpi' ...
    gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
    gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt.mpi -o _configtest
    /opt/conda/envs/rl/compiler_compat/ld: cannot find -lvt.mpi
    collect2: error: ld returned 1 exit status
    failure.
    removing: _configtest.c _configtest.o
    building 'vt-mpi' dylib library
    gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-x86_64-3.7/src/lib-pmpi/vt-mpi.o
    gcc -pthread -shared -B /opt/conda/envs/rl/compiler_compat -L/opt/conda/envs/rl/lib -Wl,-rpath=/opt/conda/envs/rl/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.7/src/lib-pmpi/vt-mpi.o -o build/lib.linux-x86_64-3.7/mpi4py/lib-pmpi/libvt-mpi.so
    checking for library 'vt-hyb' ...
    gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
    gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt-hyb -o _configtest
    /opt/conda/envs/rl/compiler_compat/ld: cannot find -lvt-hyb
    collect2: error: ld returned 1 exit status
    failure.
    removing: _configtest.c _configtest.o
    checking for library 'vt.ompi' ...
    gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c _configtest.c -o _configtest.o
    gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ _configtest.o -lvt.ompi -o _configtest
    /opt/conda/envs/rl/compiler_compat/ld: cannot find -lvt.ompi
    collect2: error: ld returned 1 exit status
    failure.
    removing: _configtest.c _configtest.o
    building 'vt-hyb' dylib library
    gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-x86_64-3.7/src/lib-pmpi/vt-hyb.o
    gcc -pthread -shared -B /opt/conda/envs/rl/compiler_compat -L/opt/conda/envs/rl/lib -Wl,-rpath=/opt/conda/envs/rl/lib -Wl,--no-as-needed -Wl,--sysroot=/ -Wl,--no-as-needed build/temp.linux-x86_64-3.7/src/lib-pmpi/vt-hyb.o -o build/lib.linux-x86_64-3.7/mpi4py/lib-pmpi/libvt-hyb.so
    running build_ext
    MPI configuration: [mpi] from 'mpi.cfg'
    checking for dlopen() availability ...
    checking for header 'dlfcn.h' ...
    gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/rl/include/python3.7m -c _configtest.c -o _configtest.o
    success!
    removing: _configtest.c _configtest.o
    success!
    checking for library 'dl' ...
    gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/rl/include/python3.7m -c _configtest.c -o _configtest.o
    gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-x86_64-3.7 -ldl -o _configtest
    success!
    removing: _configtest.c _configtest.o _configtest
    checking for function 'dlopen' ...
    gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/rl/include/python3.7m -c _configtest.c -o _configtest.o
    gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ _configtest.o -Lbuild/temp.linux-x86_64-3.7 -ldl -o _configtest
    success!
    removing: _configtest.c _configtest.o _configtest
    building 'mpi4py.dl' extension
    gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/opt/conda/envs/rl/include/python3.7m -c src/dynload.c -o build/temp.linux-x86_64-3.7/src/dynload.o
    gcc -pthread -shared -B /opt/conda/envs/rl/compiler_compat -L/opt/conda/envs/rl/lib -Wl,-rpath=/opt/conda/envs/rl/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.7/src/dynload.o -Lbuild/temp.linux-x86_64-3.7 -ldl -o build/lib.linux-x86_64-3.7/mpi4py/dl.cpython-37m-x86_64-linux-gnu.so
    checking for MPI compile and link ...
    gcc -pthread -B /opt/conda/envs/rl/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/opt/conda/envs/rl/include/python3.7m -c _configtest.c -o _configtest.o
    _configtest.c:2:10: fatal error: mpi.h: No such file or directory
     #include <mpi.h>
              ^~~~~~~
    compilation terminated.
    failure.
    removing: _configtest.c _configtest.o
    error: Cannot compile MPI programs. Check your configuration!!!
    ----------------------------------------
ERROR: Command errored out with exit status 1: /opt/conda/envs/rl/bin/python3.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-4q1x2alw/mpi4py_d44b5798f89d40429ac785557052b8ca/setup.py'"'"'; __file__='"'"'/tmp/pip-install-4q1x2alw/mpi4py_d44b5798f89d40429ac785557052b8ca/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-rdn4loj_/install-record.txt --single-version-externally-managed --user --prefix= --compile --install-headers /home/bakingsoda/.local/include/python3.7m/mpi4py Check the logs for full command output.

 

에러 해결 방법

sudo apt install mpich
pip install mpi4py

 

parallel-processing.tistory.com/9

 

mpi4py 오류 해결 log

PocketFlow 에 필요한 mpi4py >= 3.0 을 설치하려다 오류가 발생하여 해결하는 과정을 log 로 남기려 한다. anaconda environment에서 발생 ERROR: Command errored out with exit status 1:    command..

parallel-processing.tistory.com

 

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